PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04628.1.p
Common NameBRADI_2g04628
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 157aa    MW: 17304.5 Da    PI: 8.0489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04628.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-101338126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC ++  +GtC +G+ C FaHg
  Bradi2g04628.1.p 13 YKTKLCVNYDTSGTCMFGADCAFAHG 38
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-91143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-141145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1171240IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-51239IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-71338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3714875IPR000571Zinc finger, CCCH-type
SMARTSM00356194874IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-55073IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
HFLDTAPPAA LFYKTKLCVN YDTSGTCMFG ADCAFAHGTV ELRRPRVEDG RMCYNFMYKG  60
TCYCGENCIF SHASAAPGLA IRNPWELMPV EARRSETTPS VTVRSETSSA SGRAFPPAVH  120
QVPQEQEAAG GRRISNLERL SRKKTTGIYG DWPEQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04628.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232992.13e-93zinc finger CCCH domain-containing protein 1
TrEMBLA0A0Q3JWX11e-114A0A0Q3JWX1_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G04630.19e-51(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-07C3H family protein