PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04631.1.p
Common NameBRADI_2g04631
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 189aa    MW: 21148.8 Da    PI: 8.125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04631.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-085883126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC ++  +G C +G+ C FaHg
  Bradi2g04631.1.p 58 YKTKLCVNYDTSGRCFFGEHCAFAHG 83
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-145590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.98E-105688IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-45784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2675785IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-55883IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.44193121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-694119IPR000571Zinc finger, CCCH-type
SMARTSM003560.895120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-597118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEREQRETTR KNIIVVEPGE RPPQRPPPPE RSSDGIVLAV GRQQNFQLDP PLPAKLFYKT  60
KLCVNYDTSG RCFFGEHCAF AHGVAELRRP DVDMGDKICH NFRYNGTCYY GENCIFSHAS  120
PGLAIRNPSA GREMPAAPGR AFPPVPAPAV RERPHPEEQE AGARRVSNLE RLSWNKTGGT  180
YGDWPEQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A8e-12581181072Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04631.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313999.11e-139zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A0Q3QNA41e-137A0A0Q3QNA4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-08C3H family protein