PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05234.2.p
Common NameBRADI_2g05234, LOC100829082
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 261aa    MW: 27726.2 Da    PI: 10.5818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05234.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31183241159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Bradi2g05234.2.p 183 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQDKCRVKKRVERLAEDPRMVITTYEGRHVHS 241
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-33168241IPR003657WRKY domain
SuperFamilySSF1182904.32E-28175242IPR003657WRKY domain
PROSITE profilePS5081129.011178243IPR003657WRKY domain
SMARTSM007749.2E-36183242IPR003657WRKY domain
PfamPF031062.4E-24184240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFPSPGRAAL GHGTATTAGS GGRTSAAASA RTTAMAFCSF PLPPSDSPTT AHHLAHHGLL  60
GYSPLVVLDH PTTTTTSSSS STTIPSATPN LHAPPSVLHP LRSSPPPHPW SCGDGDRERQ  120
RGKGAMTGNS AAAAGSNMGV GAVRMKKAAA AAGVGAGAKA KGARRKVREP RFCFKTMSDV  180
DVLDDGYKWR KYGQKVVKNT HHPRSYYRCT QDKCRVKKRV ERLAEDPRMV ITTYEGRHVH  240
SPSRDDDDAA RANAEMTFIW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25174240874Probable WRKY transcription factor 4
2lex_A3e-25174240874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05234.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087551e-132AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565434.10.0probable WRKY transcription factor 12
TrEMBLA0A0Q3QNK50.0A0A0Q3QNK5_BRADI; Uncharacterized protein
STRINGBRADI2G05234.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.18e-47WRKY DNA-binding protein 13