PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05280.1.p
Common NameBRADI_2g05280, LOC100830304
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 221aa    MW: 23131.6 Da    PI: 4.2004
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.83.6e-169718216100
             NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                       +  + lPl+r+kki+++d ++++++aea  l++ a elf+  l+  +   a +  rr+++ + i aa  ++  + dfl+d  p  e
  Bradi2g05280.1.p  97 VLSTVLPLSRVKKIIRVDREIRKVTAEASLLIAAATELFLGSLAAGAHAAAAQRGRRAVRAAHIRAAArAHRPTADFLLDCLPAAE 182
                       45788***********************************************************98762566799*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.89E-1499180IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-17102179IPR009072Histone-fold
PfamPF008085.4E-13102163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MATVDAVAEP TEAMEVVQGE EQAAEVAAEP TKAMEQVEGE EGAAEAAAES NEAMEQVEEE  60
ERVEVEAGDP ADEEEDAAEA MEQVEEEERA EAEEVGVLST VLPLSRVKKI IRVDREIRKV  120
TAEASLLIAA ATELFLGSLA AGAHAAAAQR GRRAVRAAHI RAAARAHRPT ADFLLDCLPA  180
AEEAPRARSG SDGGAAAAAA APKPLPRGTR RIDGFFQKVT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-106HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565438.11e-146uncharacterized protein LOC100830304
RefseqXP_014753807.11e-146uncharacterized protein LOC100830304
TrEMBLI1HCQ71e-145I1HCQ7_BRADI; Uncharacterized protein
STRINGBRADI2G05280.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-12nuclear factor Y, subunit C13