PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05700.2.p
Common NameBRADI_2g05700, LOC100823359
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 440aa    MW: 48832.5 Da    PI: 7.5745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-35441861128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                       lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  Bradi2g05700.2.p  44 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecd 132
                       799************.99******999667544333..3444433445**********.455567899******************7566666 PP

               NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi2g05700.2.p 133 vqKGETRWHKTGKTRPVMA-GGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186
                       4433778************.99************5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-4039205IPR003441NAC domain
PROSITE profilePS5100534.39644205IPR003441NAC domain
PfamPF023653.1E-1645186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSSRGHISSS ELIDAKLEEH RISTARHCPN CRHKLDCKPD WLGLPAGVKF DPTDQELIEH  60
LEAKVREEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TMDGLSKHFF HRPSKAYTTG  120
TRKRRKIQTE CDVQKGETRW HKTGKTRPVM AGGRQKGCKK ILVLYTNFGK HRKPEKTNWV  180
MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWTTATGSG VAAAAATHQL QLQEQRRRDS  240
TGSGSSSSRD HEAAAVSYPA GAAGYAVAAA VEMQHLKQAA AGGDHFSFAP FRKSFEEVGG  300
IGGDQVPSDH QLGRSEPHHA GQEQQPHRPV LGTTAVPATA FLISRPTNPV SATVPPPIQH  360
TSVVLDHDQQ FQVPAIFLHH DKFQQQQQQK IDHRRSAGLE ELIRGCTSAC TKGDTSISQS  420
QETEWPYPYW PSDNQDHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134218613140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230573.10.0NAC domain-containing protein 75 isoform X4
SwissprotQ9M0F81e-145NAC75_ARATH; NAC domain-containing protein 75
TrEMBLI1HCW00.0I1HCW0_BRADI; Uncharacterized protein
STRINGBRADI2G05700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-113NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]