PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g05794.1.p

Common Name

BRADI_2g05794, LOC106865987

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 243aa MW: 25263 Da PI: 9.3134

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g05794.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.2e-37	36	91	3	58
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 + l+cprC+st+tkfCyynny+l+qPr+fCk+CrryWt GGalrnvPvGg++r + Bradi2g05794.1.p 36 AERLACPRCESTDTKFCYYNNYNLQQPRHFCKGCRRYWTVGGALRNVPVGGATRSK 91 67899************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-31	38	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.698	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-22	39	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MVLITAMDHQ QLAEEAAAAE GMVVRTSAAA AAGRPAERLA CPRCESTDTK FCYYNNYNLQ 60 QPRHFCKGCR RYWTVGGALR NVPVGGATRS KAGLVPASRR KRSSSSNSHH AAPAPPMASL 120 PVPVPAPVRP LSVSAPLPLP LLPPAPGTMQ AYELSFIPAG LQLHAASMVD PDRRLLDLGG 180 SFSSLLAPPP PQPPLHFGGF LLGGGGSGSA GLAHAPAGLQ QQPVSQALPE GFWGMGWPDL 240 SI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g05794.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002537	2e-53	AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBank	AP002746	2e-53	AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBank	AP014957	2e-53	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	2e-53	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	GQ183547	2e-53	GQ183547.1 Oryza sativa Japonica Group Dof-type zinc finger protein 18 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753871.1	1e-174	dof zinc finger protein DOF3.1
TrEMBL	A0A0Q3QNU6	1e-172	A0A0Q3QNU6_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi2g05794.1.p
Entrez Gene	106865987