PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05950.2.p
Common NameBRADI_2g05950, LOC100837058
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 461aa    MW: 49721.4 Da    PI: 6.6539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05950.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12246290554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  Bradi2g05950.2.p 246 HMISERKRREKLNDSFHALKTVLPPG-----SKKDKTSILITAREYVNSL 290
                       8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15241309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.833241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-12243294No hitNo description
Gene3DG3DSA:4.10.280.105.1E-15245310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDSSSWINAY GNSTTGNSGF MCGYAAGLQC RDGDEQQQQH DLLVTSQMQH HLNQISMEMS  60
MDDESALYNA PSGDGAALGV QHAVDFFLPS HHAASSVLHT SSSTSSSFRS ASISCSPENS  120
SAQVLTAPTT GCLQFPEVSS NVPLMVLPYD DHQHHYVNFD FHDDTVAAIA APGGNAMSTT  180
PSAFKRYARH LGPRHRRPKP ACGQRMFKTA ISVLTKMHTG MRHQSYYYQQ AAAAEPLQPS  240
GNQLQHMISE RKRREKLNDS FHALKTVLPP GSKKDKTSIL ITAREYVNSL KSKVCELEEK  300
NQVLQAQLAQ RANSDNTGED AETKAGEKVE IEITRDDSTA DQEDQVCTVK IAVIRSECSG  360
NMTNVVLGTL QRLKDEVGED VTLVAMSSSD VDGGGEAPRA SLTMQLKSAS GAKWGEAAVR  420
EAVAKAVADA LPVSRSQSTE TMTAPRRGET GRSRVSALAK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254ERKRRE
2250255RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05950.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565458.10.0putative transcription factor bHLH041
TrEMBLA0A0Q3JXG20.0A0A0Q3JXG2_BRADI; Uncharacterized protein
STRINGBRADI2G05950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-24bHLH family protein