PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06370.1.p
Common NameBRADI_2g06370, LOC100822524
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 353aa    MW: 37472.6 Da    PI: 5.3871
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       C+ +e  e++  C  ++  lC+ C    H        H +
  Bradi2g06370.1.p  4 LCSACEAAEARVVCCADEAALCARCDRDVHAAnrlagkHHR 44
                      7******99******************99955677778554 PP
2zf-B_box292.2e-0960101237
          zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       ++++C+ ++e ++ +fC +++ llC++C ++ H        H
  Bradi2g06370.1.p  60 SAPNCDICQEGHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 101
                       5789******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000212.60E-6346No hitNo description
PROSITE profilePS501199.58459106IPR000315B-box-type zinc finger
SMARTSM003362.6E-1359106IPR000315B-box-type zinc finger
PfamPF006431.8E-76193IPR000315B-box-type zinc finger
CDDcd000214.31E-964106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MKVLCSACEA AEARVVCCAD EAALCARCDR DVHAANRLAG KHHRLPLLSS SSAALQSSSS  60
APNCDICQEG HAYFFCVEDR ALLCRSCDVA VHTANAFVSA HRRFLLTGVQ VGLQPADHQD  120
PDPEPEPEPE PEPEPQPPPC KKRRSPTPPL YSDDDIGWAA GGITGTLPDW SAVDQQFSSS  180
PPPTPRNPAA EEPVGVIKTP PKRIPRTAPV SAALFGGSMP DWPLDEFFRF ADFNSGFGFA  240
DNGTSKADSG KLGSTDGSPN RRSLSSSSSG AAATQNAQEF FGQVPEVHWS SVPELPSPPT  300
ASGLRWQGDP HYGDTAAVFV PDISSPDNAF RCFASAGCGG TQTESLKRRR RC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559201e-121AK355920.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565203.10.0B-box zinc finger protein 22
TrEMBLI1HD340.0I1HD34_BRADI; Uncharacterized protein
STRINGBRADI2G06370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-44light-regulated zinc finger protein 1