PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06400.1.p
Common NameBRADI_2g06400, LOC100825899
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 356aa    MW: 37586.9 Da    PI: 8.4087
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.68.1e-65181651149
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                       g++gr+ptw+ErEnnkrRERrRRaiaaki++GLR++G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg++p+e+++a+g+s s sp+ss
  Bradi2g06400.1.p  18 GAGGRMPTWRERENNKRRERRRRAIAAKIFSGLRSHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGCRPTERMDAIGCSVSPSPCSS 110
                       689****************************************************************************************** PP

            DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsss 149
                       +q        +sp++sy+ sp+sssfps +s+ + +++++       + +lp+l++ s+++ s
  Bradi2g06400.1.p 111 YQ--------PSPRASYHGSPTSSSFPSGASSPFPPHSNNtvngvdaTPILPWLQTFSNSTTS 165
                       **........67777777777777777777766666666566666669999999998875544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.7E-6320159IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MATGGGGGGD AGFGAAAGAG GRMPTWRERE NNKRRERRRR AIAAKIFSGL RSHGGYKLPK  60
HCDNNEVLKA LCNEAGWVVE PDGTTYRKGC RPTERMDAIG CSVSPSPCSS YQPSPRASYH  120
GSPTSSSFPS GASSPFPPHS NNTVNGVDAT PILPWLQTFS NSTTSNKRPY LPPLLIHGGS  180
ISAPVTPPLS SPTARTPRMK TDWDESVIQP PWHGSNSPCV VNSTPPSPGR SMVPDPAWLA  240
GIQISSTSPS SPTFSLMSSN PFSVFKEAIP VPGSNSSRMC TPGQSGTCSP VIPGMARHPD  300
VHMMDVVSDE FAFGSSSNDA QQAPGLVRAW EGERIHEDSG SDELELTLGS SRTRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-232292372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-232292372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-232292372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-232292372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565213.20.0protein BZR1 homolog 2
SwissprotQ0JPT41e-169BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A0Q3IS520.0A0A0Q3IS52_BRADI; Uncharacterized protein
STRINGBRADI2G06400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.18e-80BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]