PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07050.1.p
Common NameBRADI_2g07050, LOC100828072
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 261aa    MW: 27389.9 Da    PI: 10.1381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-1464110354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riNs +++Lr+++P        K++Ka+ L +++ ++k+L
  Bradi2g07050.1.p  64 RSHSEAERRRRERINSHLATLRSMVPCT-----DKMDKAALLAEVIAHVKKL 110
                       68*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7961110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1463114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0011764112No hitNo description
Gene3DG3DSA:4.10.280.102.9E-1464112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1164110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNSGGLYDGF YGGFGGGHGF SQLGASSSSA LLDGGARELD AAMDVQKRKG GGGEPEEKAA  60
TALRSHSEAE RRRRERINSH LATLRSMVPC TDKMDKAALL AEVIAHVKKL KAHAARVGTH  120
CPVPSGADEV TVELLHHPPT PHAATTTNNN NNGAGLLVKA TLSCADDCAD LFADVRRALR  180
PLAPRLLRSE VTTLGGRVRI SFLMAREGGV TADSVRRALG SVLDSRVSSA AAFDFAPRDS  240
LLKSKRRRVS SAFDSSSSSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
2244248KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-39HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565499.10.0transcription factor bHLH30
TrEMBLI1HDA80.0I1HDA8_BRADI; Uncharacterized protein
STRINGBRADI2G07050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-19bHLH family protein