PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07980.1.p
Common NameBRADI_2g07980, LOC100842118
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 548aa    MW: 60918.6 Da    PI: 7.3018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18205295199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp +f++++  k   ++ ++lede+gr ++ k+   +++++  l++GW++F+  +g+k+gD+vvF+l+++++f  +
  Bradi2g07980.1.p 205 FIKHMLQSHVIQGFWLGLPCDFCNKYLPK--HDTAIVLEDEDGRNYDTKY--LGTKQG--LSAGWRGFAINHGIKVGDVVVFQLVSSTKF--K 289
                       899********************999433..5568***************..888877..9**********************9987777..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi2g07980.1.p 290 VYILRA 295
                       998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-21199296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-24200295IPR015300DNA-binding pseudobarrel domain
CDDcd100177.68E-26203294No hitNo description
SMARTSM010192.1E-19205296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831205296IPR003340B3 DNA binding domain
PfamPF023622.3E-16205295IPR003340B3 DNA binding domain
PfamPF052662.7E-7419534IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAIDQSLKTK RGRPAGAGSP AAKSMSKMEQ KMALVYQRLA LLDSESDKDA DVVPIVKLDE  60
DLATVVDQQP TIINCDNTDS EEEYVPLRIV RPGRGDSAQK RLPCLSQTHD DHNINTATNK  120
RERPASSQSA KSNKEQKKTL VKPKIALIES VSTNSSASDK DDHLVPMVSG VNGEKTFASV  180
QGNCGSAMER AKELQGKLPA EHPSFIKHML QSHVIQGFWL GLPCDFCNKY LPKHDTAIVL  240
EDEDGRNYDT KYLGTKQGLS AGWRGFAINH GIKVGDVVVF QLVSSTKFKV YILRATNFST  300
TDGALGLLCL DAGKEKMPKQ GSSNGVQSKE EPKLTRVSSK VIHSDGSNLV SESIDGIQFS  360
ESDIDFDNVA SFSNFSIIVD SLVIDCKFPN HLRKTYYELC RAQKSFLHKN LLKQINLTLA  420
VGVIMETINI AEGIRACKAH TSSREDFVIW KKTLESFELL GMNVAFLLKR MDQLLGLPDR  480
SRDLVECKEY KEIKLEQAQA KEKIQDLESK MLNLKDTLKN MDVEMEEMES SAKRRDEMVQ  540
RLATAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754264.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0Q3IC210.0A0A0Q3IC21_BRADI; Uncharacterized protein
STRINGBRADI2G07980.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]