PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g07986.1.p

Common Name

BRADI_2g07986

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 458aa MW: 50519.6 Da PI: 7.0982

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g07986.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.8e-17	243	333	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v++ l lp +f+++h k ++ ++lede+g s++ k+ +++++ l++GW++F+ ++g+k+gD++ F+l+++++f + Bradi2g07986.1.p 243 FVKRMLQSHVSQGFSLGLPCDFCNKHLPK--HDTVIVLEDEDGCSYDTKY--LGTKKG--LGAGWRDFAISHGVKVGDVLDFQLVNSTKF--K 327 89*******************999433..5569***********..666665..*********************9987777..8 PP EEEE-S CS B3 94 vkvfrk 99 v + r+ Bradi2g07986.1.p 328 VYISRA 333 887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-23	238	334	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.0E-19	238	334	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.97E-24	241	332	No hit	No description
Pfam	PF02362	1.1E-14	243	333	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.07	243	334	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-19	243	334	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MASTSTVAMQ IDQPLKASTV LSSKFSCPSI CSFPNFATKG FLHSNHPELE QILFSRLPWL 60 VIFFFQRKRG KPAGRTGNHP SAAKSEMEQK MPLVTVEKEL SIVADQQSII INCDDKDDEE 120 YVLLNDKEHA IVVDQPPIIL IKDTDDEKEN VPLNNKRVRP AASKSAKSNK EQKKTLLKLK 180 LALIESGGHG SNSSERDNDA HPVPMVFDVD GQQTCASVQG NCGSAMKSAK EVQVKLPGEQ 240 PSFVKRMLQS HVSQGFSLGL PCDFCNKHLP KHDTVIVLED EDGCSYDTKY LGTKKGLGAG 300 WRDFAISHGV KVGDVLDFQL VNSTKFKVYI SRANNFTSTD GALSILSLDA GKEVPEEERS 360 DGTKSKENAK VTTVSSKKTL DDGNDLVGES IIGIKLLDSD INFDDVTCFS NFNIVVDSLV 420 IDCKFTDRLR KMYYELCSAQ KSFLHKNLLK KKISHLL*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MASTSTVAMQ IDQPLKASTV LSSKFSCPSI CSFPNFATKG FLHSNHPELE QILFSRLPWL  60
VIFFFQRKRG KPAGRTGNHP SAAKSEMEQK MPLVTVEKEL SIVADQQSII INCDDKDDEE  120
YVLLNDKEHA IVVDQPPIIL IKDTDDEKEN VPLNNKRVRP AASKSAKSNK EQKKTLLKLK  180
LALIESGGHG SNSSERDNDA HPVPMVFDVD GQQTCASVQG NCGSAMKSAK EVQVKLPGEQ  240
PSFVKRMLQS HVSQGFSLGL PCDFCNKHLP KHDTVIVLED EDGCSYDTKY LGTKKGLGAG  300
WRDFAISHGV KVGDVLDFQL VNSTKFKVYI SRANNFTSTD GALSILSLDA GKEVPEEERS  360
DGTKSKENAK VTTVSSKKTL DDGNDLVGES IIGIKLLDSD INFDDVTCFS NFNIVVDSLV  420
IDCKFTDRLR KMYYELCSAQ KSFLHKNLLK KKISHLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g07986.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014754264.1	1e-154	B3 domain-containing protein Os01g0234100 isoform X2
Swissprot	Q0JP99	6e-92	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A0Q3FYM7	0.0	A0A0Q3FYM7_BRADI; Uncharacterized protein
STRING	BRADI2G07980.1	1e-147	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	8e-34	B3 family protein

Link Out ? help Back to Top
Phytozome	Bradi2g07986.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]