PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07986.2.p
Common NameBRADI_2g07986
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 408aa    MW: 44816.9 Da    PI: 6.8404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07986.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-17193283199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v++   l lp +f+++h  k   ++ ++lede+g s++ k+   +++++  l++GW++F+ ++g+k+gD++ F+l+++++f  +
  Bradi2g07986.2.p 193 FVKRMLQSHVSQGFSLGLPCDFCNKHLPK--HDTVIVLEDEDGCSYDTKY--LGTKKG--LGAGWRDFAISHGVKVGDVLDFQLVNSTKF--K 277
                       89*********************999433..5569***************..666665..***********************9987777..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v + r+
  Bradi2g07986.2.p 278 VYISRA 283
                       887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-23188284IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19188284IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-25191282No hitNo description
PROSITE profilePS5086313.07193284IPR003340B3 DNA binding domain
PfamPF023629.5E-15193283IPR003340B3 DNA binding domain
SMARTSM010195.8E-19193284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASTSTVAMQ IDQPLKRKRG KPAGRTGNHP SAAKSEMEQK MPLVTVEKEL SIVADQQSII  60
INCDDKDDEE YVLLNDKEHA IVVDQPPIIL IKDTDDEKEN VPLNNKRVRP AASKSAKSNK  120
EQKKTLLKLK LALIESGGHG SNSSERDNDA HPVPMVFDVD GQQTCASVQG NCGSAMKSAK  180
EVQVKLPGEQ PSFVKRMLQS HVSQGFSLGL PCDFCNKHLP KHDTVIVLED EDGCSYDTKY  240
LGTKKGLGAG WRDFAISHGV KVGDVLDFQL VNSTKFKVYI SRANNFTSTD GALSILSLDA  300
GKEVPEEERS DGTKSKENAK VTTVSSKKTL DDGNDLVGES IIGIKLLDSD INFDDVTCFS  360
NFNIVVDSLV IDCKFTDRLR KMYYELCSAQ KSFLHKNLLK KKISHLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421LKRKRGKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07986.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754264.11e-160B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A0Q3ISR20.0A0A0Q3ISR2_BRADI; Uncharacterized protein
STRINGBRADI2G07980.11e-152(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-34B3 family protein