PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08080.1.p
Common NameBRADI_2g08080, LOC100844558
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 618aa    MW: 67416.2 Da    PI: 7.0707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-13463509455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Bradi2g08080.1.p 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 509
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-4960245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-15462513No hitNo description
SuperFamilySSF474592.22E-18462524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18463521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEVEED GANGGTGGTW TEEDRALSTT VLGRDAFAYL TKGGGAISEG LVAASLPADL  60
QNKLQELIES EHPHGGWNYA IFWQLSRTKS GDLVLGWGDG SCREPHDGEV GGAASVGNDD  120
ANQRMRKRVL QRLHTAFGGA DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA  180
GMPLWIPNTD RNVFPVNYCY RGYLASTAGF RTIVLVPFET GVLELGSMQQ VVESPDALQA  240
IKAVFAGSGN IVQRREGNGH IEKSPGLAKI FGKDLNLGRP SAAPVIGVPK GDERSWEQRA  300
AGAGVGSSLL PNVQKGLQNF TWSQARGLNS HQQKFGNGIL IVSNEVPHNN GAADSPTTAQ  360
FQLQKATQLQ KLPQLQKQPP QLVKPLQMVN QQQLQAQAPR QIDFSAGTSS KSGVLVARTA  420
VLDGESSEVN GLCKEEGAPP IIEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AIAYITDLQK KLKDMETERE RFLESGMADP RDRAPRPEVD  540
IQVVRDEVLV RVMSPMENHP VKKVFEAFEE AEVRVGESKV TGNNGTVVHS FIIKCPGSEQ  600
QTREKVIAAM SRAMNMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28457519264Transcription factor MYC2
5gnj_B2e-28457519264Transcription factor MYC2
5gnj_E2e-28457519264Transcription factor MYC2
5gnj_F2e-28457519264Transcription factor MYC2
5gnj_G2e-28457519264Transcription factor MYC2
5gnj_I2e-28457519264Transcription factor MYC2
5gnj_M2e-28457519264Transcription factor MYC2
5gnj_N2e-28457519264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768200.0AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566142.10.0transcription factor bHLH13
TrEMBLI1HDN70.0I1HDN7_BRADI; Uncharacterized protein
STRINGBRADI2G08080.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-68bHLH family protein