PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08120.2.p
Common NameBRADI_2g08120
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 799aa    MW: 88282.2 Da    PI: 8.0295
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.9e-20215315198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    ++
  Bradi2g08120.2.p 215 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL--RT 304
                       88****************************9644.445569********************************************9999..45 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       +e+e +v+v+ 
  Bradi2g08120.2.p 305 EEGEQRVGVRH 315
                       78888999986 PP
2Auxin_resp82.87.2e-28341420181
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                       a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG Rfkm+fe+e+++ +++sGt+vg  +l+p +W+ S+W+s
  Bradi2g08120.2.p 341 ASHALQTKSIFLVYYRPRVSQSQYIVNVNKYFLTSKLRYTVGVRFKMSFEGEEVPVKKFSGTIVGDGALSP-QWSCSEWKS 420
                       789*******************************************************************9.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-34209344IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-33211330IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-15213314No hitNo description
PROSITE profilePS5086310.588215317IPR003340B3 DNA binding domain
PfamPF023621.0E-17215315IPR003340B3 DNA binding domain
SMARTSM010197.9E-14215317IPR003340B3 DNA binding domain
PfamPF065072.2E-24341420IPR010525Auxin response factor
PfamPF023096.9E-7679730IPR033389AUX/IAA domain
PROSITE profilePS5174523.982693781IPR000270PB1 domain
SuperFamilySSF542772.75E-9694766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTTADQ TTRPPPQAAS SLPRLASSSS GRQAAGQGAF ASRPSSSSLP  60
KMTPPVTMPP GGGRDAELFS ELWRACAGPL VELPQPGQRV FYFLQGHLEQ VLGSVVLNSP  120
VFPPSFSFAF PFLLSVCRLS VQQPSDQKVL ADQIKMFQVP YKILCRVVNV ELKAEVETEE  180
VYAQITLLPE QDQEYLPSSP DPPLPEVRRP VVHSFSKILT PSDTSTHGGF SVLRRHANEC  240
LPPLDMSMPT PTQELICKDI LGSEWRFKHI YRGQPRRHLL TTGWSTFVTS KKLVYGDAFV  300
YLRTEEGEQR VGVRHHVQKR TAMPSSVMSS QSMHLGVLAS ASHALQTKSI FLVYYRPRVS  360
QSQYIVNVNK YFLTSKLRYT VGVRFKMSFE GEEVPVKKFS GTIVGDGALS PQWSCSEWKS  420
KKVQWDDPAN CNGPERVSPW EIEPADGAAS ASTINVPLQS SIRNKRPRET TEDLDLQSLN  480
PTTQEFSLSG MPRQHDKIGD GPSNPNRMIP GNQVIWPGER AAGYSAVGSS SFCQKPLVRE  540
SWLEEFNLSR QAMSPTLSEI SQKLYQVTRN DARAAPWPVL PAYQAQQPAL RLPCNTALHS  600
YRTEEAAPSL PKVTEKSKEP GMVRLFGVNL MKPTSGTATA DNAGAGAGET SARVAGPCEE  660
SGQVSALSRV TKDHKVVNES PREIQSNQSC IARNRVKVQM HGNAVGRAVD LANLDGYEQL  720
IRELEQMFDI KDIKQNFKVA FADNDGDTMK VGDDPWMEFC RMVKKIVIYP LEEEKMEPHQ  780
TPISAAAAAP EQDPKTEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1407044611356Auxin response factor 1
4ldw_A1e-1407044611356Auxin response factor 1
4ldw_B1e-1407044611356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08120.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230667.10.0auxin response factor 1 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0Q3FVR70.0A0A0Q3FVR7_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP1421044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-151auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]