PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08120.4.p
Common NameBRADI_2g08120, LOC100843643
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 774aa    MW: 85528 Da    PI: 7.9138
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.6e-20190290198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    ++
  Bradi2g08120.4.p 190 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL--RT 279
                       88****************************9644.445569********************************************9999..45 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       +e+e +v+v+ 
  Bradi2g08120.4.p 280 EEGEQRVGVRH 290
                       78888999986 PP
2Auxin_resp82.96.9e-28316395181
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                       a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG Rfkm+fe+e+++ +++sGt+vg  +l+p +W+ S+W+s
  Bradi2g08120.4.p 316 ASHALQTKSIFLVYYRPRVSQSQYIVNVNKYFLTSKLRYTVGVRFKMSFEGEEVPVKKFSGTIVGDGALSP-QWSCSEWKS 395
                       789*******************************************************************9.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-34184319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-33186305IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-15188289No hitNo description
SMARTSM010197.9E-14190292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588190292IPR003340B3 DNA binding domain
PfamPF023621.0E-17190290IPR003340B3 DNA binding domain
PfamPF065072.1E-24316395IPR010525Auxin response factor
PfamPF023096.3E-7654705IPR033389AUX/IAA domain
PROSITE profilePS5174523.982668756IPR000270PB1 domain
SuperFamilySSF542772.6E-9669741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTTADQ TTRPPPQAAS SLPRLASSSS GRQAAGQGAF ASRPSSSSLP  60
KMTPPVTMPP GGGRDAELFS ELWRACAGPL VELPQPGQRV FYFLQGHLEQ VLGSVVQQPS  120
DQKVLADQIK MFQVPYKILC RVVNVELKAE VETEEVYAQI TLLPEQDQEY LPSSPDPPLP  180
EVRRPVVHSF SKILTPSDTS THGGFSVLRR HANECLPPLD MSMPTPTQEL ICKDILGSEW  240
RFKHIYRGQP RRHLLTTGWS TFVTSKKLVY GDAFVYLRTE EGEQRVGVRH HVQKRTAMPS  300
SVMSSQSMHL GVLASASHAL QTKSIFLVYY RPRVSQSQYI VNVNKYFLTS KLRYTVGVRF  360
KMSFEGEEVP VKKFSGTIVG DGALSPQWSC SEWKSKKVQW DDPANCNGPE RVSPWEIEPA  420
DGAASASTIN VPLQSSIRNK RPRETTEDLD LQSLNPTTQE FSLSGMPRQH DKIGDGPSNP  480
NRMIPGNQVI WPGERAAGYS AVGSSSFCQK PLVRESWLEE FNLSRQAMSP TLSEISQKLY  540
QVTRNDARAA PWPVLPAYQA QQPALRLPCN TALHSYRTEE AAPSLPKVTE KSKEPGMVRL  600
FGVNLMKPTS GTATADNAGA GAGETSARVA GPCEESGQVS ALSRVTKDHK VVNESPREIQ  660
SNQSCIARNR VKVQMHGNAV GRAVDLANLD GYEQLIRELE QMFDIKDIKQ NFKVAFADND  720
GDTMKVGDDP WMEFCRMVKK IVIYPLEEEK MEPHQTPISA AAAAPEQDPK TEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1447042111356Auxin response factor 1
4ldw_A1e-1447042111356Auxin response factor 1
4ldw_B1e-1447042111356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08120.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230667.10.0auxin response factor 1 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2K2D7I10.0A0A2K2D7I1_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-156auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]