PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g08366.1.p

Common Name

BRADI_2g08366, LOC100823363

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 288aa MW: 30808.7 Da PI: 6.3978

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g08366.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.2e-50	12	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptd+e++v+yLkkkv++ ++++i++vdiyk++Pw+Lp k+ +e ew+fFs+r++ky++g r+nr++ sgyWkatg+dk++l Bradi2g08366.1.p 12 LPPGFRFQPTDQEIIVCYLKKKVTSAASAATSIIADVDIYKFDPWELPGKAMFGEGEWFFFSPRERKYPNGARPNRTAGSGYWKATGTDKPIL 104 79***********************999999***********77777899*********************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + g+kk Lvfy+gr+p+g ktdWvmhe+rl Bradi2g08366.1.p 105 ASgGARCLGVKKALVFYQGRSPRGAKTDWVMHEFRL 140 9555669*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-60	6	171	IPR003441	NAC domain
PROSITE profile	PS51005	59.621	12	171	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEEGFVFRGW QLPPGFRFQP TDQEIIVCYL KKKVTSAASA ATSIIADVDI YKFDPWELPG 60 KAMFGEGEWF FFSPRERKYP NGARPNRTAG SGYWKATGTD KPILASGGAR CLGVKKALVF 120 YQGRSPRGAK TDWVMHEFRL LHPDDGAAHS NNHPRDSMRL DDWVLCRVRK KGAASVPVAP 180 DAGGLGSGAA PPSHAGVAPV QVPDAPYGVG GYVDDWTDCQ ILQYLIAGGG SGQADGAGAV 240 GESAPGGTLA SVLETIKRNL SFEAVEDAHH DQQLPTSSTS LPMFEID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-65	12	175	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-65	12	175	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-65	12	175	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-65	12	175	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-65	12	175	20	172	NAC domain-containing protein 19
3swm_B	6e-65	12	175	20	172	NAC domain-containing protein 19
3swm_C	6e-65	12	175	20	172	NAC domain-containing protein 19
3swm_D	6e-65	12	175	20	172	NAC domain-containing protein 19
3swp_A	6e-65	12	175	20	172	NAC domain-containing protein 19
3swp_B	6e-65	12	175	20	172	NAC domain-containing protein 19
3swp_C	6e-65	12	175	20	172	NAC domain-containing protein 19
3swp_D	6e-65	12	175	20	172	NAC domain-containing protein 19
4dul_A	6e-65	12	175	17	169	NAC domain-containing protein 19
4dul_B	6e-65	12	175	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g08366.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-88	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565559.1	0.0	NAC transcription factor 56
Swissprot	A0SPJ9	1e-69	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A0Q3FVS4	0.0	A0A0Q3FVS4_BRADI; Uncharacterized protein
STRING	EMT29965	1e-129	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-61	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Bradi2g08366.1.p
Entrez Gene	100823363

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]