PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08810.1.p
Common NameBRADI_2g08810, LOC100822943
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 403aa    MW: 42353.2 Da    PI: 5.1845
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.94e-3088187297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                       lf+rlw++e e+++L+G+++f++++g+   +++ d+  fye +++++sf++sk+ql+eK+rrLKkK++ + ++ +++g  ++f+++h+  i++
  Bradi2g08810.1.p  88 LFKRLWTDEEELLILRGFLEFTSRRGTafASHQyDTVPFYEEIRHKLSFEFSKNQLIEKLRRLKKKYRVCANRmVAQGGAFAFKSAHEGAIYD 180
                       69************************99877778**************************************9999***************** PP

            DUF573  91 lskkiWg 97 
                       +++ iW+
  Bradi2g08810.1.p 181 VARHIWH 187
                       ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-2789187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADDPASAAA SRSSSSADED DEGTDSDASN NSNPAAPQEP PALPDNSAPP PAPEPAGPIP  60
PPPPPSSHPQ GATAAAAAAA ATEESRRLFK RLWTDEEELL ILRGFLEFTS RRGTAFASHQ  120
YDTVPFYEEI RHKLSFEFSK NQLIEKLRRL KKKYRVCANR MVAQGGAFAF KSAHEGAIYD  180
VARHIWHPSF KRNGGDASDE DDVNPAEAAA AAAAAAAAAT ALPVAVEDGG GGSAPATTPR  240
GRGSRRGRRR TAQEMEAPTT PATPALMLTD IAQEPAAVSL QNSVPMIAPP PRVLAHVPAP  300
VRPNGPTEED VRSILSPLLK ELISSVAVTG QTGLGLGIGF GGVGSADILG LGSGLSGHNL  360
GVPSEEKWRQ QQILELEVYL KRIELVREQV TTALDELRSS QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566363.10.0probable transcription factor At5g28040
TrEMBLI1HDW80.0I1HDW8_BRADI; Uncharacterized protein
STRINGBRADI2G08810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-32DNA-binding storekeeper protein-related transcriptional regulator