PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08905.4.p
Common NameBRADI_2g08905, LOC104582534
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 166aa    MW: 17917.1 Da    PI: 8.4935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08905.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-096688527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                       C++f rtGtCk+Gd+C++ H++
  Bradi2g08905.4.p 66 VCNHFVRTGTCKFGDSCRYFHPK 88
                      6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.9E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.3E-14448No hitNo description
PfamPF062204.6E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.5876189IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-46388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-76489IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-76688IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-66686IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARRRHLQGAQ HHRARALWYD SVRRQESIGG ASPFLQHDAA  60
ILGKGVCNHF VRTGTCKFGD SCRYFHPKPH AVNPASAPSG PVTGVMVQQS NFLGTQPSIV  120
GYQAAEISSF SGNILGGHTS WGNLPPSLQP PPDGGHPSLP FIDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08905.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230700.11e-121zinc finger CCCH domain-containing protein 3
SwissprotQ0JP114e-80C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLI1HDY31e-120I1HDY3_BRADI; Uncharacterized protein
STRINGBRADI2G08905.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-42C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]