PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g09530.1.p
Common NameBRADI_2g09530, LOC100839502
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 496aa    MW: 55006.4 Da    PI: 5.4651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g09530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.2e-5191361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGf FhP+d elv++yLk+k+ g+++e  ++i+evdiyk+ePwdLp+  +v +++++w+fF+ rd+ky++g r+nrat +gyWk+tgkd++
  Bradi2g09530.1.p   9 LPPGFGFHPKDTELVSHYLKRKILGQRIEY-DIIPEVDIYKHEPWDLPAkcNVPTQDNKWHFFAARDRKYPNGARSNRATVAGYWKSTGKDRA 100
                       79****************************.99***************5346667999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ ++++vg+kktLvf++gr p+g++t+W+mhey +
  Bradi2g09530.1.p 101 IKV-DKRTVGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136
                       ***.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-594158IPR003441NAC domain
PROSITE profilePS5100555.39159IPR003441NAC domain
PfamPF023659.1E-2510135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
METLRNMTLP PGFGFHPKDT ELVSHYLKRK ILGQRIEYDI IPEVDIYKHE PWDLPAKCNV  60
PTQDNKWHFF AARDRKYPNG ARSNRATVAG YWKSTGKDRA IKVDKRTVGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDENE CHACPDMKDA FVLCKVTKRV DWTSENGNEV GNSDPHPQQS  180
NVAATSAVSA EQPDAAAESV IGGELPNDLA TSAITAQTTT PDGDDEIQGW LEGMIDFSFN  240
SAVDPVSAGL SLDEQNAESS NRGAMAPKVE PDYASPNQFV VDDDSDYLLP DDIYNMLCPG  300
SDDFMPWHTE QAALAFADQT YSIMGVDPFT LPSNFAEGTQ NEELQLPLEI NEPNLSNEAA  360
DNGVIIRTRN GKTPAESIPP YRSNRTRLQH SINRMVVSSS ESINETMKFV DNGGRLDLMT  420
NVEHKKKHVR DVTTVRQRDA GKSNRNQNNQ GFFRGVRKSV WGCSAAGLNI LVALCMVGVA  480
VAILHHGCHR TGISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-44716213172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g09530.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0017230.0GU001723.1 Triticum aestivum cultivar Suwon11 NAC-domain transcription factor (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566632.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLI1HE560.0I1HE56_BRADI; Uncharacterized protein
STRINGBRADI2G09530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Representative plantOGRP1283345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.19e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]