PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g10640.2.p

Common Name

BRADI_2g10640

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 463aa MW: 50731.2 Da PI: 6.9534

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g10640.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.7e-36	81	140	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr++C++C+ryWt+GG +rnvPvG+grr+nk++s Bradi2g10640.2.p 81 DIIVPCPRCNSMETKFCYFNNYNVSQPRHYCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 140 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	77	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.969	84	138	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-31	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQLDAVVTKL RIDENKNDAV PCVSDKLLNV KETPFCSKNS EDNDLQALSR HGGIMGTDSK 60 SEDTKTESDE LDQDKVLKKP DIIVPCPRCN SMETKFCYFN NYNVSQPRHY CRNCQRYWTA 120 GGNIRNVPVG SGRRRNKHAS HFRQAMMRHD NNIAAAEDVP SVIHHLPLPL VAPVLPGPIK 180 ENETAKEFGS EVPVCNSMAT VLDNGEQKGI HLVPLVSGDN KEEQSCASSA AVLGCSENMT 240 LDSIVKKESG NVSGYCNGMT LPQSHVQSYP NGPALVFPWS PGWNSIAVMA ASQCSTEPVH 300 GLEIAKHSLL SWAPPSMMTA PGICAPVVPF PLMPPFWSCL PGWPNGTWSS PWPGSNGSPN 360 KITCSENNSP TLGKHSREVA DMQEEEKREN TLWIPKTRRI DGTAEATKSS ILDTLGIKHD 420 ENGLFKSFQR KVPKNDKTPD SPLTLQANPA AFSRSQSFQE RT*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQLDAVVTKL RIDENKNDAV PCVSDKLLNV KETPFCSKNS EDNDLQALSR HGGIMGTDSK  60
SEDTKTESDE LDQDKVLKKP DIIVPCPRCN SMETKFCYFN NYNVSQPRHY CRNCQRYWTA  120
GGNIRNVPVG SGRRRNKHAS HFRQAMMRHD NNIAAAEDVP SVIHHLPLPL VAPVLPGPIK  180
ENETAKEFGS EVPVCNSMAT VLDNGEQKGI HLVPLVSGDN KEEQSCASSA AVLGCSENMT  240
LDSIVKKESG NVSGYCNGMT LPQSHVQSYP NGPALVFPWS PGWNSIAVMA ASQCSTEPVH  300
GLEIAKHSLL SWAPPSMMTA PGICAPVVPF PLMPPFWSCL PGWPNGTWSS PWPGSNGSPN  360
KITCSENNSP TLGKHSREVA DMQEEEKREN TLWIPKTRRI DGTAEATKSS ILDTLGIKHD  420
ENGLFKSFQR KVPKNDKTPD SPLTLQANPA AFSRSQSFQE RT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g10640.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565663.1	0.0	cyclic dof factor 2
TrEMBL	A0A0Q3IDD0	0.0	A0A0Q3IDD0_BRADI; Uncharacterized protein
STRING	BRADI2G10640.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-56	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Bradi2g10640.2.p