PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11080.2.p
Common NameBRADI_2g11080
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 389aa    MW: 43030 Da    PI: 5.6059
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11080.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.1e-132669146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      rg++ +eE++l++++++ lG++ W+ Ia ++  gRt++++k+ w++
  Bradi2g11080.2.p 26 RGAFEQEEEDLIIELHAVLGNK-WSQIATRLA-GRTDNEIKNLWNS 69
                      899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.426120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5619IPR009057Homeodomain-like
SuperFamilySSF466891.01E-19779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-242075IPR009057Homeodomain-like
PROSITE profilePS5129424.2342175IPR017930Myb domain
SMARTSM007171.8E-102573IPR001005SANT/Myb domain
PfamPF002491.3E-112669IPR001005SANT/Myb domain
CDDcd001679.64E-83168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVAGLQRCGK SCRLRWMNYL RPDLKRGAFE QEEEDLIIEL HAVLGNKWSQ IATRLAGRTD  60
NEIKNLWNSC IKKKLRQKGL DPNTHKPLAD EADRRKVAPT MSTERTSESS DVDQSSAGAL  120
GNLSHLLTET AQSPELLPVL GKQRAKTPSL TCVKVPPKEF FLDQLASGHE SLPSCHSSLP  180
MPNFPFQQPP CYSNGFSSRD GGSKNSLWWF NQNESSGSAI STVMPPVSPS TLSTSTVLNL  240
SPDNPHSGGT GIHSAQFYWD TANPSSSCST RSSGNNNLGF ELQSTSSLLE NSVFPWAELA  300
QDKDSQVHLE EELKWPELLH GTFPETSTAM QNLSQSLYED VVKAESQFNM EGLCAAWSQN  360
LQPQQHLQLV TDMYDKDLQR MSSPFENI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2077540108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11080.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567480.10.0transcription factor MYB61
TrEMBLI1HEN90.0I1HEN9_BRADI; Uncharacterized protein
STRINGBRADI2G11080.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-51myb domain protein 61