PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11100.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 482aa    MW: 52691 Da    PI: 7.8893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16351397455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Bradi2g11100.2.p 351 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 397
                       5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-17344401No hitNo description
SuperFamilySSF474591.44E-20345406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-13351397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-20351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSDGNEFAEL LWENGQAVVH GRRKHPQPSF QPFGTGSSGV QEKHPGGAGD NMMAFTKAAG  60
VFGGMGIHDL ASGLQHENGD DDAVPWIHYP IMEDDNNNNA PALTTADYSS DFFSELQEAA  120
ANLGSLPPSN HSTNNNRGTP VAGSSRAASK EIQGLSALTT RTAEPQAELA AAKQPRPSDS  180
VMNFSLFSRP AALARATLQS AHRPQGTDKV PNAAANNRME STVIQTTSGP RTGPVFVDQR  240
AAWPQQKEVR FAPAPALTAS VGNLQQEMAR DKLSNNRVVH KDAARKAPDA TVTTSSVCSG  300
NGIVNDEPWH QQKRKIQAEC SASQDEDLDD ESGALLRSTN RSMKRSRTAE VHNLSERRRR  360
DRINEKMRAL QELIPNCNKI DKASMLDEAI EYLKTLQLQV QMMSMGTGLC IPPMLLPPAM  420
QHLQLSQMAH FPHLGMGLGC SRTRSWDPWR KCHANVWNPW ASNPFVRFQY TTIYIFGRSS  480
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022521e-113AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233063.20.0transcription factor APG
RefseqXP_024314974.10.0transcription factor APG
SwissprotQ0JNI91e-178PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A2K2D7W80.0A0A2K2D7W8_BRADI; Uncharacterized protein
STRINGBRADI2G11100.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-50phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]