PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11156.1.p
Common NameBRADI_2g11156
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22305.9 Da    PI: 10.5881
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ri n++ r +tf +R ng+ KKA+EL +LC+++++vi++++
  Bradi2g11156.1.p 10 RIPNDTARRTTFRNRHNGLVKKASELATLCNVKACVIVYGE 50
                      899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.138150IPR002100Transcription factor, MADS-box
CDDcd002669.84E-25282No hitNo description
SuperFamilySSF554552.88E-22394IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161050IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MARKKVALRR IPNDTARRTT FRNRHNGLVK KASELATLCN VKACVIVYGE GEVQPEVWPS  60
VAEVVPILHR YKAMPDIAQC KKTMTQEGLL RQRMDKLREQ IQKARHENHK RHTASLVHNA  120
MLGRLPGLEG LAVEEVTNVG WMVQMNLKSL GERIANLQAL AALGARAQPA PSLTYEQQVP  180
HQETWIDMVR APLFHNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11156.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693101e-171KF469310.1 Brachypodium distachyon MADS-box transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230798.31e-143agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3G0641e-144A0A0Q3G064_BRADI; Uncharacterized protein
STRINGBRADI2G11150.12e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-28AGAMOUS-like 80