PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11260.1.p
Common NameBRADI_2g11260, LOC100825507
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 367aa    MW: 39796.9 Da    PI: 6.8397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.5e-07168210754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + E++RR r+ +++  L  l+P++     +K + a++   A+eYI++L
  Bradi2g11260.1.p 168 KKEKQRRLRLTEKYTALMLLIPNR-----TKEDRATVISDAIEYIQEL 210
                       57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.734161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-4167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-5168210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9169234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-6170210No hitNo description
Gene3DG3DSA:4.10.280.101.7E-7170218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYHPQCELLM PHESLDMDAV VGQSHLAASG VSAIPAELNF HLLHHSFVDT AASPQPPTVD  60
YFFPGTDPPP AAVQFEQLAA TNHHAMSMLR DYYGQQYPAE TYLRGGPRTT TGSSSLVFGV  120
AHDDESAAYN MVGPFVESSP TTRAAGGGRK RNRGSRAAGG PAHGGVEKKE KQRRLRLTEK  180
YTALMLLIPN RTKEDRATVI SDAIEYIQEL GRTVEELTLL VGKKRRRNGA GEHHLHQGDV  240
VDAAPAVGAA GELVLAAESS EGEVQAPLAA LQPIRSTYIQ RKSKETFVDV RIVEDEVNIK  300
LTKRRRDGCL AAASRALDDL RLDLVHLSGG KIGDCHIYMF NTKIHQGSPV FASAVASKLI  360
EVVDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153GRKRNRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068501e-115AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567568.10.0transcription factor TIP2
SwissprotQ5JNS01e-167TIP2_ORYSJ; Transcription factor TIP2
TrEMBLI1HEQ80.0I1HEQ8_BRADI; Uncharacterized protein
STRINGBRADI2G11260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-36bHLH family protein