PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g12490.1.p
Common NameBRADI_2g12490
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 117aa    MW: 13288.7 Da    PI: 12.1331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g12490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-064899955
                      HHHHHHHHHHHHHHHHCTSCCC.......TTS-STCH.HHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkas....kapskKlsKa.eiLekAveYIksLq 55
                       rrR + i+ ++  Lr+l+P as    + ++ + s   e L +  +YI sLq
  Bradi2g12490.1.p 48 RRRRLEVIRRKIRALRTLVPRASngelQDRQDRHSRLdELLLHSADYILSLQ 99
                      59*******************999***555555555527899********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.9943998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-746112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-649109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MAARAASSCC RVAAARRFLL ARKKKALEAG TRKKLAGAKQ KQGMPTSRRR RLEVIRRKIR  60
ALRTLVPRAS NGELQDRQDR HSRLDELLLH SADYILSLQM QVQVMQFMVH VLNPKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13150RKKLAGAKQKQGMPTSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g12490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819435.12e-20uncharacterized protein LOC112895669
TrEMBLI1HF556e-77I1HF55_BRADI; Uncharacterized protein
STRINGBRADI2G12490.11e-77(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126
Representative plantOGRP1597422