PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g12566.1.p
Common NameBRADI_2g12566
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 376aa    MW: 40242.2 Da    PI: 4.8539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g12566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.7e-131052244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      +i+n++ r  t++ R +g+ KKAeEL +LC + va+++ +  g
  Bradi2g12566.1.p 10 FIDNTRARAATYASRTKGLRKKAEELATLCSVPVALVVCAAAG 52
                      79************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.652152IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-16181IPR002100Transcription factor, MADS-box
CDDcd002663.25E-15384No hitNo description
PRINTSPR004044.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-111049IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPRRKIAMRF IDNTRARAAT YASRTKGLRK KAEELATLCS VPVALVVCAA AGAGAAQAPP  60
LVWESREGVL DRYRALPPEV RAQHTHRGYL EADLGKERAK HARVRQHGLG ALADSDAALL  120
NGMTLDEARE LLEAVEAALV ATTQRMEALG LPMTTNDVEG GQELEQFTFP DGLDSAMMPG  180
VGGNPLVDMD AGFQLQMLPY HGNNEFAGQL EQPFSWDDRL LPMQQRNGEM MAQPASYGFQ  240
CTDANYLGAA VATNGGYGQQ MQPPVYGNAD HYGWTDLAMW NTTDESCNAA LPPVGCYPSL  300
GSGTGGVDFI GSTAVPQHSA LVTGGGNYIN VQPLGYAMGN GMGVNLASQQ ADCYATHHWS  360
AEEFQRADTG RIAYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g12566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565738.10.0uncharacterized protein LOC100843549
TrEMBLA0A0Q3FXQ20.0A0A0Q3FXQ2_BRADI; Uncharacterized protein
STRINGMLOC_66440.13e-75(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1278735