PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14120.4.p
Common NameBRADI_2g14120
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 216aa    MW: 23180.8 Da    PI: 6.4068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-05190211323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C+ C+k+F++   L++H +  H
  Bradi2g14120.4.p 190 CKSCSKTFNSETALQSHSKAkH 211
                       *****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.2E-63118No hitNo description
PROSITE profilePS5015711.177188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEFWGLELKP GQTVKVEPEP EHFLHLSQGA LGESKKDDKA TMFVKIDGKK LAIGTLSTDK  60
FPQIQFDLVF EKDFELSHSS KSSSVFFSGY KVFQPAEGDE MDFDSEGSEE SEEDEEEAVI  120
PVTKENGKAE GKQKQVKIDA GSSKAATPSG QKTGDKKGAV HVATPHPAKK ASKTPATSDK  180
SPKSGGSVAC KSCSKTFNSE TALQSHSKAK HNEAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567768.18e-79histone deacetylase HDT2 isoform X1
RefseqXP_024315864.17e-79histone deacetylase HDT2 isoform X2
SwissprotQ9M4U52e-50HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A0Q3FYS01e-151A0A0Q3FYS0_BRADI; Uncharacterized protein
STRINGBRADI2G14120.13e-78(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-20histone deacetylase 3