PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14927.1.p
Common NameBRADI_2g14927, LOC100828679
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 226aa    MW: 25279.1 Da    PI: 8.8656
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14927.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.61.3e-271970259
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                      e+vrY+eCl+NhAa+ Ggh++DGCgEfmp+      a +l+CaACgCHR+FHR+e+++
  Bradi2g14927.1.p 19 EAVRYHECLRNHAAAQGGHVLDGCGEFMPA------ALSLTCAACGCHRSFHRKEEDN 70
                      679**************************9......789***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-232168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-232267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-162267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.3752367IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.1E-28136204IPR009057Homeodomain-like
SuperFamilySSF466891.69E-18138203IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-26146203IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEFGGQGNNG AAASGHREEA VRYHECLRNH AAAQGGHVLD GCGEFMPAAL SLTCAACGCH  60
RSFHRKEEDN AQHHHQLHHR LIPPPPQLLM PPPPMPHPYP PSFPYHHHSR TPSGGGTTTT  120
ESSSEDPGPP PSSAAAAQAS PAQGRRKRFR TRFTAEQKER MQAFAERVGW RMQRQDDALV  180
DTFCAQLGVR RQVFKVWMHN NKQLRIRQQL QQDQQSQQPQ DQQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251472021873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14927.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698238e-43EU969823.1 Zea mays clone 336101 mRNA sequence.
GenBankKF1849218e-43KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
GenBankKJ7268078e-43KJ726807.1 Zea mays clone pUT3146 ZF-HD transcription factor (ZHD11) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565834.11e-166zinc-finger homeodomain protein 6
SwissprotB8AX538e-74ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLI1HFY71e-165I1HFY7_BRADI; Uncharacterized protein
STRINGBRADI2G14927.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-25homeobox protein 22