PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g15872.1.p
Common NameBRADI_2g15872
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 178aa    MW: 19647.3 Da    PI: 11.0676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g15872.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.63.5e-20100148146
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk 46 
                       ldDg +WrKYGqK++ g+++pr+Y rCt++   gC+++k+v+r+a++++
  Bradi2g15872.1.p 100 LDDGLSWRKYGQKDILGAKYPRAYLRCTHRhsqGCQATKQVQRDAQQQQ 148
                       58***************************98999*********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2087148IPR003657WRKY domain
SuperFamilySSF1182906.8E-1894147IPR003657WRKY domain
PROSITE profilePS5081117.86795163IPR003657WRKY domain
SMARTSM007743.0E-20100155IPR003657WRKY domain
PfamPF031061.6E-18101146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAEDAYWWRR RRRGGLATEL DRLLEMAREL EVRVERGSPA TARDLCAALA ASVDNAVRLA  60
GTGTPRGGGA IGGKLRRKRG AMEKVRRQVR VSSVHDLAPL DDGLSWRKYG QKDILGAKYP  120
RAYLRCTHRH SQGCQATKQV QRDAQQQQGS PVGADGMQWP LEPMTPSSFP SSARHWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1488142258Disease resistance protein RRS1
5w3x_D2e-1488142258Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g15872.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565888.11e-72probable WRKY transcription factor 41
TrEMBLA0A0Q3FZJ51e-125A0A0Q3FZJ5_BRADI; Uncharacterized protein
STRINGBRADI2G15877.14e-72(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.16e-22WRKY DNA-binding protein 30