PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18250.1.p
Common NameBRADI_2g18250, LOC100825598
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 441aa    MW: 49451.2 Da    PI: 9.9856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07132174346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        W+ eE ++l ++++++  + +  Ia +++++R+ +++ksr+++
  Bradi2g18250.1.p 132 TWSREETDQLFELCERFDLR-FIVIADRFPTNRSVEDLKSRYYS 174
                       7*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.4E-31105179IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007171.9E-7129178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5131177IPR009057Homeodomain-like
SuperFamilySSF466894.16E-6132176IPR009057Homeodomain-like
CDDcd116583.98E-18133175No hitNo description
PfamPF054991.8E-6291373IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043967Biological Processhistone H4 acetylation
GO:0043968Biological Processhistone H2A acetylation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
GO:0003714Molecular Functiontranscription corepressor activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDAKDILGLP KTPFQSSQEK KQRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL  60
KRRPAVEKEK IAWQWLPFTS SARTDSLQLY HWVKVANGVP PSGDYEFAKY NTKVDVLKYT  120
EEEYEKYLTE PTWSREETDQ LFELCERFDL RFIVIADRFP TNRSVEDLKS RYYSVTRALL  180
IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QHERKDAEVL AEAKRIMESR  240
ATKSLEEAGA QASFHNAAAP ADGVSLSNSH PLSTATHPAL AANNTIPDSL RMLKVYLRSH  300
ALDQMVQTVS ASAGLRMIKR VDQTLQDLGV NLKPKVPTKA VCAEHLELRN EILTLLNLQK  360
QLQNKEAEVL ANRESSFTEA PGTPKRANRD VDRPFVPDTT GFGGDRGVKR DHKRKSTGRF  420
MDAPPSPPQS KRPRKLKASD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A8e-20104184488DNA methyltransferase 1-associated protein 1
4iej_A8e-20104184488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974020.0FP097402.1 Phyllostachys edulis cDNA clone: bphylf054o08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567993.10.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLI1HH210.0I1HH21_BRADI; Uncharacterized protein
STRINGBRADI2G18250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61531216
Representative plantOGRP6713810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-148MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]