PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18396.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 126aa    MW: 14559.5 Da    PI: 10.8506
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.29.8e-1212544790
              FAR1 47 ktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      k +k+rr+++ + t+Cka++ vk++ d++w+v  +  eHnH+l 
  Bradi2g18396.1.p 12 KPRKKRRRETIKGTNCKARMIVKLM-DSRWQVVYFIGEHNHPLI 54
                      3467899999***************.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-91254IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MRLIKKMLCM KKPRKKRRRE TIKGTNCKAR MIVKLMDSRW QVVYFIGEHN HPLITKPSLT  60
KYLRSHQGIP KEEDNFLRIL HDSNLETGRM MQLMSSFYGS GLLVPYTTKA ISNCLGCVHK  120
PVVVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416KKMLCMKKPRKKR
21018KKPRKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312602.16e-42protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3K3155e-88A0A0Q3K315_BRADI; Uncharacterized protein
STRINGBRADI1G10750.12e-59(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-09FAR1 family protein