PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18530.1.p
Common NameBRADI_2g18530, LOC100831237
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 244aa    MW: 25315.9 Da    PI: 6.671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30156213158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+H h
  Bradi2g18530.1.p 156 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPSYVVTTYEGTHSH 213
                       59*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33142216IPR003657WRKY domain
SuperFamilySSF1182907.72E-28148216IPR003657WRKY domain
PROSITE profilePS5081131.215151216IPR003657WRKY domain
SMARTSM007742.0E-34156215IPR003657WRKY domain
PfamPF031061.4E-24157213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAVGAAPVL FYQQPAPAAA PALAAGDAIG CFFSPSSPMS SFFSSHGHGG SSSTAGSSPA  60
SGFSPALPTQ PPPVTDPAAQ FDISEYLFDD GIFAAATDAA APPSGAAVAA AMDGVGASAV  120
AALGRSPADQ QQQQAAVERP RTERIAFRTR SEIEILDDGY KWRKYGKKSV KNSPNPRNYY  180
RCSTEGCSVK KRVERDRDDP SYVVTTYEGT HSHVSPSTVY YASQDAASGR FFVAGTQPPG  240
SLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25146217778Probable WRKY transcription factor 4
2lex_A3e-25146217778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378811e-146CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence.
GenBankDQ2981791e-146DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568011.11e-176probable WRKY transcription factor 48
TrEMBLI1HH541e-174I1HH54_BRADI; Uncharacterized protein
STRINGBRADI2G18530.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-41WRKY DNA-binding protein 51