PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18980.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 471aa    MW: 51978.4 Da    PI: 8.3667
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18980.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.3e-341232142102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye++ed+++++++sw   g sfvv+d+ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F +g+ +ll
  Bradi2g18980.3.p 123 FLIKTYEMVEDPATNRVVSWGPGGASFVVWDPPEFSRDMLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFGNEDFVRGHMHLL 206
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Bradi2g18980.3.p 207 KNIHRRKP 214
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-60119212IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-36119212IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.5E-38119212IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-19123146IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-31123212IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-19161173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340162186IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-19174186IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MHGSELNRCF RSGPGRASGV SPGSVSRSTK PTPAFIHCIS LWVDPVSQTS HATTSPGDAR  60
TKPRKAPSPR RGGRCRRSSI KRPPATGGAA SLYPTEPSRF VRFRGNMESC QSSQGGGGGP  120
PPFLIKTYEM VEDPATNRVV SWGPGGASFV VWDPPEFSRD MLPKYFKHNN FSSFIRQLNT  180
YGFRKIDPER WEFGNEDFVR GHMHLLKNIH RRKPVHSHSL QNQANGPLAE AERRDLEDEI  240
SRLKHEKSVL LADLQRQAQQ QCGINWHMQS LEDRLVVMEQ RQENVVAYLG DILQRRRGTV  300
SGSVLLETDH FSKKRRVPRI DFFAQEPAVE EQRVPYLPAM VAETPGVLPP VSGANAEPFE  360
KMELALVSLE KLFQRAGNYA PYEDVYNAAA APSSALALGN LQAAPMEGSI NLQPSAELAE  420
PPGYSQSPVL PSAYIHEDMG KTITGVDMNS EASTSGTSQD ETDCRNQSFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A6e-251212128110Heat shock factor protein 1
5hdn_A6e-251212128110Heat shock factor protein 1
5hdn_B6e-251212128110Heat shock factor protein 1
5hdn_C6e-251212128110Heat shock factor protein 1
5hdn_D6e-251212128110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294315RRRGTVSGSVLLETDHFSKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18980.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3623151e-160AK362315.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315365.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-4d-like
SwissprotQ93VB51e-139HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2K2D9820.0A0A2K2D982_BRADI; Uncharacterized protein
STRINGBRADI2G18980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP1286345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-62heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]