PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g18980.4.p
Common NameBRADI_2g18980
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 365aa    MW: 40652.6 Da    PI: 5.2873
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g18980.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.4e-34171082102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye++ed+++++++sw   g sfvv+d+ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F +g+ +ll
  Bradi2g18980.4.p  17 FLIKTYEMVEDPATNRVVSWGPGGASFVVWDPPEFSRDMLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFGNEDFVRGHMHLL 100
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Bradi2g18980.4.p 101 KNIHRRKP 108
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3813106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6013106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3613106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-201740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-205567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MESCQSSQGG GGGPPPFLIK TYEMVEDPAT NRVVSWGPGG ASFVVWDPPE FSRDMLPKYF  60
KHNNFSSFIR QLNTYGFRKI DPERWEFGNE DFVRGHMHLL KNIHRRKPVH SHSLQNQANG  120
PLAEAERRDL EDEISRLKHE KSVLLADLQR QAQQQCGINW HMQSLEDRLV VMEQRQENVV  180
AYLGDILQRR RGTVSGSVLL ETDHFSKKRR VPRIDFFAQE PAVEEQRVPY LPAMVAETPG  240
VLPPVSGANA EPFEKMELAL VSLEKLFQRA GNYAPYEDVY NAAAAPSSAL ALGNLQAAPM  300
EGSINLQPSA ELAEPPGYSQ SPVLPSAYIH EDMGKTITGV DMNSEASTSG TSQDETDCRN  360
QSFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-251010619129Heat shock factor protein 1
5d5v_B6e-251010619129Heat shock factor protein 1
5d5v_D6e-251010619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188209RRRGTVSGSVLLETDHFSKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g18980.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3623151e-161AK362315.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315365.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-4d-like
SwissprotQ93VB51e-140HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLI1HHA60.0I1HHA6_BRADI; Uncharacterized protein
STRINGBRADI2G18980.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-63heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]