PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19070.1.p
Common NameBRADI_2g19070, LOC100844257
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 239aa    MW: 25497.6 Da    PI: 7.5024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.9e-33159217159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+ vv++tYeg Hnh+
  Bradi2g19070.1.p 159 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAKDTAVVVTTYEGVHNHP 217
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-33145217IPR003657WRKY domain
SuperFamilySSF1182901.7E-28151218IPR003657WRKY domain
PROSITE profilePS5081128.552154219IPR003657WRKY domain
SMARTSM007741.7E-38159218IPR003657WRKY domain
PfamPF031065.9E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDNSQEEVDR GRHMSMQPED ELPPVQQFQY LQSPPMAALM EQLQASSACD STAALGAAAA  60
GIPELVDWAS LLLPLGSAAA GTSSQSQQQQ VEAAAGVGVG GSEAETMVMS GGGGDELQGI  120
KGNNGAAGGS GRGKGGRKGK EKASRPRFAF QTRSENDVLD DGYRWRKYGQ KAVKNSAFPR  180
SYYRCTHHTC NVKKQVQRLA KDTAVVVTTY EGVHNHPCEK LMEALSPILR QLQFLSQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-26150216874Probable WRKY transcription factor 4
2lex_A9e-26150216874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404121e-109DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566009.21e-177probable WRKY transcription factor 75
TrEMBLI1HHB61e-176I1HHB6_BRADI; Uncharacterized protein
STRINGBRADI2G19070.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-56WRKY DNA-binding protein 56