PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19867.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 574aa    MW: 63413.1 Da    PI: 9.0873
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19867.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-2431132199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  Bradi2g19867.3.p  31 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQVR-PSQELIAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 120
                       99****************************975554.4569************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        ++el+++++r+
  Bradi2g19867.3.p 121 CDGELRLGIRRA 132
                       99999****996 PP
2Auxin_resp110.41.8e-36157237182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +a++++++s+F+v++ Pr+++seF+v+++k++k+l++++s+GmRfk+++e+ed++er+ +G+++gvs++dp+rWp+SkWr+L
  Bradi2g19867.3.p 157 VASSFRNRSTFHVCFDPRSGASEFIVPYWKFSKSLNHPLSIGMRFKLSYESEDANERS-TGMISGVSEVDPIRWPGSKWRCL 237
                       5778999**************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-4422156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-3927133IPR015300DNA-binding pseudobarrel domain
CDDcd100177.12E-2329131No hitNo description
PROSITE profilePS5086312.97131133IPR003340B3 DNA binding domain
PfamPF023621.2E-2231132IPR003340B3 DNA binding domain
SMARTSM010193.0E-2231133IPR003340B3 DNA binding domain
PfamPF065074.4E-30158237IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MSRQNLGGTA WGEEDMEFGS GEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  60
DYEQVRPSQE LIAKDLHGTQ WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV SGDAVLFLRG  120
CDGELRLGIR RAVQLRNEDL FKAVNSSDSR QRTLSAVASS FRNRSTFHVC FDPRSGASEF  180
IVPYWKFSKS LNHPLSIGMR FKLSYESEDA NERSTGMISG VSEVDPIRWP GSKWRCLLVR  240
WDGNTDCNHQ HRISPWEIER VGGMNSVTHS LSASNSKRTK LSFPESNLDA PVIDGNGYPD  300
SMEIKKFRRV LQGQELMGSK TRGVACSQSP DVANIRTSDN RWFSNVQEQA SEFTYQHLGF  360
GESVGFPEVL QGQEMSQAVP FFKGTTFDTR ATNGRVGSFS HVRQSAAPTG LPAEAQGYSL  420
PQFALSSAAK VSSPSSVLMF NQATVPQLEL EGRTHHHGAY LSQCSPLEMA SKTDAWLRVQ  480
RPVPRETGGH RFDIGRASTP ANSGLATRDS GRSNCRLFGF SLTEKILGAG EDVKGGNSNE  540
EADRADPRLL ELFGHSHPSP SALHALVAAP LGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-7421259150388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19867.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568111.10.0auxin response factor 14 isoform X2
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0Q3G4H50.0A0A0Q3G4H5_BRADI; Auxin response factor
TrEMBLA0A2K2D9G10.0A0A2K2D9G1_BRADI; Auxin response factor
STRINGBRADI2G19867.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-124ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]