PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g19930.1.p

Common Name

LOC100832233

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 205aa MW: 21836.6 Da PI: 9.5605

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g19930.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.3	5.9e-37	64	119	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ Bradi2g19930.1.p 64 PLPCPRCRSEDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 119 679**************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.7E-31	64	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.397	65	119	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-25	65	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MVEMGGGAAA AGFKLFGKVI TRQQQQQPPT RASPDSSSSG GGRGSVEQLE EAARRARAAA 60 GARPLPCPRC RSEDTKFCYF NNYNVNQPRH FCRACHRYWT AGGAIRNVPV GSGRRKNRPV 120 LPHADYQVRL APGPASASAS VEAPDMAPAL GFIPAPEHGW SSLYVVPSPS PAAAAYRGHG 180 AEMEQCWWLV HAERPPLGSS DPAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g19930.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ312328	1e-84	AJ312328.1 Hordeum vulgare partial dof151 gene for dof zinc finger protein.
GenBank	AK357438	1e-84	AK357438.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053I13.
GenBank	AK357968	1e-84	AK357968.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066A04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566046.2	1e-148	dof zinc finger protein 5
TrEMBL	I1HHN4	1e-146	I1HHN4_BRADI; Uncharacterized protein
STRING	BRADI2G19930.1	1e-147	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	8e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi2g19930.1.p
Entrez Gene	100832233