PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g20590.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 341aa    MW: 37274.1 Da    PI: 4.7036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g20590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.6e-22121431126
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 
                       l pG+ F P+d+e++++ L+ k++g++   +++++++++d+y ++P +L +      + ++e+k+wyfF+  + k+++g+rk+r++   +g+W
  Bradi2g20590.1.p  12 LHPGISFTPEDDEVITRCLRFKAAGEPlpPPCAQFVHDADVYAADPAKLVAnfipasARTGESKSWYFFCYPKAKSTRGSRKSRTIGegEGTW 104
                       579***********************977677789**************744677643334667********************87645889* PP

               NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                       ++  + k+v++ +g +vg ++++      ++ gek+ W+m e+
  Bradi2g20590.1.p 105 HSEYR-KDVVDGEGLVVGYRRSFSHE---TNGGEKSGWLMMEF 143
                       *9877.777777999******99875...78899********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-309167IPR003441NAC domain
PROSITE profilePS5100529.64312167IPR003441NAC domain
PfamPF023653.2E-1314143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSPPHEPAA VLHPGISFTP EDDEVITRCL RFKAAGEPLP PPCAQFVHDA DVYAADPAKL  60
VANFIPASAR TGESKSWYFF CYPKAKSTRG SRKSRTIGEG EGTWHSEYRK DVVDGEGLVV  120
GYRRSFSHET NGGEKSGWLM MEFGFCDDDD NQENQEVSPV LCKVYQTPRK RRSAANSSSS  180
SRSALKRKAE DKISDTGWSA RSRRKLVFPS TPTTNPATPP TMGATETPED LLPETPALFM  240
TDDHSRSLLS CNSYDDDDDD DNNNNNTTLT PVADESPPVQ SVLQAETTWT LDQSFFSPHH  300
AGPSAEISDG MALLLPWADR ASPSCTPYAE TSLAPLPFQC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g20590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1HHW60.0I1HHW6_BRADI; Uncharacterized protein
STRINGBRADI2G20590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.15e-15NAC domain containing protein 96