PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g20720.4.p
Common NameBRADI_2g20720, LOC100841119
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 260aa    MW: 27518.9 Da    PI: 8.633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g20720.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000121471841254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  Bradi2g20720.4.p 147 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIGYIKFL 184
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.357135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-5145189No hitNo description
Gene3DG3DSA:4.10.280.106.3E-8145193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDWTRAFMDG KAAESEQHPT SFNALLGLQG DASRQFLLDQ AALLQQPGVS SLQYADSRPS  60
MTPFCSQQQQ LPGGGFFISS SSGIFGSSPG PPPEHIKSNT GPAAVQVHQD ACSSSATKRN  120
GAGAGSPVAS KKPRIDTPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIGY  180
IKFLHDQVAS LSSPYLSSCG RALQDQHQLQ GSIKVDGKAK EDLRSRGLCL VPVASTYTVA  240
NEAAPEFWNP TFGVGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g20720.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378346e-81CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566069.10.0transcription factor bHLH123
SwissprotQ94JL31e-46BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A0Q3QWB20.0A0A0Q3QWB2_BRADI; Uncharacterized protein
TrEMBLA0A2K2D9K70.0A0A2K2D9K7_BRADI; Uncharacterized protein
STRINGBRADI2G20720.11e-131(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]