PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g21197.1.p

Common Name

BRADI_2g21197, LOC100823248

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 222aa MW: 23943.8 Da PI: 6.3045

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g21197.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.8e-10	79	123	6	50
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++rr NReA r++R++Kka+ + Lee+v +L a N++L +l+ Bradi2g21197.1.p 79 KTRRPLGNREAVRKYREKKKARAAFLEEEVRKLRAANQQLLRRLQ 123 7899999*********************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.0E-10	70	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.691	76	123	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-14	76	142	No hit	No description
Pfam	PF07716	2.7E-12	77	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-7	79	124	No hit	No description
CDD	cd14686	1.24E-11	79	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDDGVDLPSQ FLFSHPEPEM PGAFDDLLSN NASTSSCSHT HTCNAPGPSA AMHSHTCQHT 60 HTKVFATGSE DDDGNPAAKT RRPLGNREAV RKYREKKKAR AAFLEEEVRK LRAANQQLLR 120 RLQGHGALEA EVVRLRSLLP DVRAKIDAEV AVPVAVTPFQ KMPLQCSVGS VVCSDRPALC 180 FNGNSEAGAW EESSRPAAAG CRFEEDGNGG VAREIDVLEQ I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g21197.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566090.1	1e-163	basic leucine zipper 23
TrEMBL	A0A2K2D9N7	1e-162	A0A2K2D9N7_BRADI; Uncharacterized protein
STRING	BRADI2G21197.1	1e-163	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75
Representative plant	OGRP1970	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	2e-19	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g21197.1.p
Entrez Gene	100823248