PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g21820.2.p

Common Name

BRADI_2g21820, LOC100841220

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 332aa MW: 35890.3 Da PI: 6.317

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g21820.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.4e-15	261	304	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Bradi2g21820.2.p 261 RKQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKKQ 304 689**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.3E-15	256	304	No hit	No description
SMART	SM00338	9.0E-13	257	325	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.588	259	304	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.85E-25	261	315	No hit	No description
SuperFamily	SSF57959	3.56E-11	261	306	No hit	No description
Pfam	PF00170	9.6E-13	261	304	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	264	279	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MIQAMSSHAG GSGGGGGYGG QARRGQMQSL ARQGSLYSLT LNQVQSQLGE PLISMNLDEL 60 LKSVFPDEYD PESGPVASQS EQALGLQRQG SIMMPPELSK KTVDEVWKCI QDSPNTGAEE 120 GGQQRRERQP TLGETTLEDF LVKAGVVTEG YLKDPNDLTA NVNVVGSSVI ASGAPSLNPG 180 AQWLQQYQQQ ALEPHHPSMP GSFMASQLGP QPLAVGTGDI LESIYSDGQM TSPMLGALSD 240 PQTPGRKRSA SGGVPDKVVE RKQKRMIKNR ESAARSRARK QAYTNELENK VSRLEEENER 300 LKKQKELDMI IFSAPPPEPK YQLRRTSSSP V*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g21820.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753472.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-84	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	I1HI90	0.0	I1HI90_BRADI; Uncharacterized protein
STRING	BRADI2G21820.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-84	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Bradi2g21820.2.p
Entrez Gene	100841220

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]