PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22130.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 435aa    MW: 48770 Da    PI: 9.9112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22130.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18297384196
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k++++s+v++  +l lp +f+++h   ++++++++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l++ ++f  +
  Bradi2g22130.3.p 297 FVKTMVRSHVSSCFWLGLPTRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF--K 381
                       89*********************9995..34779****************..555444..***********************9987777..5 PP

                       EEE CS
                B3  94 vkv 96 
                       + +
  Bradi2g22130.3.p 382 IYI 384
                       555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-21289386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-24290386IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-28295386No hitNo description
PfamPF023622.7E-17297385IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478297388IPR003340B3 DNA binding domain
SMARTSM010196.0E-23297388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MPIFPKIYPF LVISGFFRTF GPGLGLESEG RARPGTSGFG LRAGPGHPCP GFHFQTGCHV  60
LANSDSNCAP LSRMPRRHTW DPRARATGPP ASQTGTPVDE ESLCWGFKFE NFGTRGRPPS  120
ANKAKRSSIL SPFPLLCLEK ELHRILDYSL CAKAEERGLA MATEASSAAA GTAYEEERRK  180
RILENLKHLE DLGIAKMSKS LIQAARAQNK STRASPKSRK KFEATTEVRR SSRTRTSVSY  240
KDDFPEVDHF VRRRRASRSA ENGRGYTGRI SSYQQQQRAF KRAEKLQDSL DPDNPSFVKT  300
MVRSHVSSCF WLGLPTRFCK DHLPPREFKM VLEDEEGVEF DTVYIGNRTG LSGGWRGFSM  360
HHNLEDGDSL VFELVEPDRF KIYIIKAIDE DANEAKSSRD STEEEPDQKD SPVSEAPSSP  420
EPLKGAKRRK LRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422428LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22130.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949790.0FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.10.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-133Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2K2D9S90.0A0A2K2D9S9_BRADI; Uncharacterized protein
STRINGBRADI2G22130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]