PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22130.4.p
Common NameBRADI_2g22130, LOC100845795
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 135aa    MW: 15366.2 Da    PI: 5.3273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22130.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17184596
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                      +++s+v++  +l lp +f+++h   ++++++++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l++ ++f  ++ +
  Bradi2g22130.4.p  1 MVRSHVSSCFWLGLPTRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF--KIYI 84
                      57899**************9995..34779****************..555444..***********************9987777..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-20186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-17186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125188IPR003340B3 DNA binding domain
PfamPF023623.6E-16185IPR003340B3 DNA binding domain
SMARTSM010191.1E-16188IPR003340B3 DNA binding domain
CDDcd100171.19E-24186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVRSHVSSCF WLGLPTRFCK DHLPPREFKM VLEDEEGVEF DTVYIGNRTG LSGGWRGFSM  60
HHNLEDGDSL VFELVEPDRF KIYIIKAIDE DANEAKSSRD STEEEPDQKD SPVSEAPSSP  120
EPLKGAKRRK LRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22130.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949791e-101FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.19e-97B3 domain-containing protein Os05g0481400
SwissprotQ5KQI43e-70Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2K2D9S93e-91A0A2K2D9S9_BRADI; Uncharacterized protein
TrEMBLA0A2K2D9T05e-94A0A2K2D9T0_BRADI; Uncharacterized protein
STRINGBRADI2G22130.13e-96(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]