PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22505.1.p
Common NameBRADI_2g22505, LOC104582638
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 258aa    MW: 27834.2 Da    PI: 6.3478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22505.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-184089255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g WvAeIrdp     +  kr +lg+f ta +Aa a+++a+ +++g
  Bradi2g22505.1.p 40 KYRGVRQRR-WGTWVAEIRDP-----NasKRQWLGTFATAVDAAMAYDRAAVAIHG 89
                      8*****998.**********9.....445**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.6E-3240103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-284098IPR001471AP2/ERF domain
CDDcd000184.88E-264097No hitNo description
PfamPF008472.1E-104089IPR001471AP2/ERF domain
PROSITE profilePS5103220.9294097IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-204097IPR016177DNA-binding domain
PRINTSPR003673.3E-84152IPR001471AP2/ERF domain
PRINTSPR003673.3E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEQAPAKTSS ASRKKRTKVK AFRTPAAHAG KGSLEKVHHK YRGVRQRRWG TWVAEIRDPN  60
ASKRQWLGTF ATAVDAAMAY DRAAVAIHGP SARLNLPSAS PTAAADGSVF GEHAVKPVAA  120
AASVFGEHGM KPVGAPASLF GEHGVKPMVA GTATSVFDEY EVKPMVTASV FDEHEVKPMS  180
AHGGSGDMGI TWHCGASWAA QEEVFADYLD YPDIAWYFNM DPSTEMLAYY PDRKSEDYQI  240
DGFDDDVLDS PLWALGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-154197663ATERF1
3gcc_A2e-154197663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22505.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231269.20.0dehydration-responsive element-binding protein 2D
TrEMBLA0A0Q3G3D40.0A0A0Q3G3D4_BRADI; Uncharacterized protein
STRINGTraes_1BL_E0397871B.11e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-17ERF family protein