PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g23136.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 121aa MW: 13064.9 Da PI: 9.0512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g23136.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	25	46	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 +kCp+C+++Fs++ L H+++ Bradi2g23136.1.p 25 FKCPYCSEVFSTHQALGGHMSK 46 89*****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.5E-8	25	45	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.559	25	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MAAPNGSTLN LCRSSASSCS RGRGFKCPYC SEVFSTHQAL GGHMSKRTCI DEPHRYQLPP 60 LPPTILPASP ILGALPTWLA PNPYFWEEYR RGGRRPVEIN FLGIPRSPDL VPANGNVSGT 120 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g23136.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2D9Z0	9e-83	A0A2K2D9Z0_BRADI; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Bradi2g23136.1.p