PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g23160.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 170aa    MW: 17758.7 Da    PI: 8.263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g23160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009987109123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cg  F+    L  H+r+H
  Bradi2g23160.1.p  87 HECAVCGLEFPMGQALGGHMRRH 109
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-639109No hitNo description
PfamPF139122.2E-83962IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3674067IPR007087Zinc finger, C2H2
SMARTSM003550.884062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS501578.70487109IPR007087Zinc finger, C2H2
PfamPF139129.9E-1187110IPR007087Zinc finger, C2H2
SMARTSM003550.7787109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTLAQEQQGL ALALSPGSSA GGGGRSSPGV GVRGAAEGTF ECRTCGRRFP SFQALGGHRT  60
GHTRRHNALP PAAASAHGKA RREPPQHECA VCGLEFPMGQ ALGGHMRRHR LPARGAVEVE  120
EHTTLDLNRS APSDQEEDRH RGGGGDRELE QGCSSSGSDS QPRLLNLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g23160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568294.11e-117zinc finger protein ZAT8
TrEMBLA0A0Q3IZS61e-115A0A0Q3IZS6_BRADI; Uncharacterized protein
STRINGBRADI2G23160.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-23C2H2 family protein