PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g23530.2.p
Common NameBRADI_2g23530
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 542aa    MW: 58486.1 Da    PI: 8.6217
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g23530.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-103644011954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Bradi2g23530.2.p 364 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 401
                       554459******************************88 PP
2BELL95.64.3e-31223292372
              BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +e q +k++L+sl+eeV+krYkqy++qlq+vissFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  Bradi2g23530.2.p 223 AEQQWRKTRLISLMEEVCKRYKQYYQQLQAVISSFETVAGLSNAAPFASIALRTMSKHFKYLKGMIQSQL 292
                       58899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-37152290IPR006563POX domain
PfamPF075263.6E-37157288IPR006563POX domain
PROSITE profilePS5007112.455342405IPR001356Homeobox domain
CDDcd000867.34E-14345406No hitNo description
SMARTSM003891.4E-11345409IPR001356Homeobox domain
SuperFamilySSF466892.69E-17347412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-29348409IPR009057Homeodomain-like
PfamPF059204.7E-19362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSAAGGGYG QQGGGGEHHQ HQHQHQLLLG QAAAGQLYHV PQHSRREKLR FPPDHPAADS  60
SSPTAPGSSS WPPPPPFYSY ASSSSSYSPH SPSSLAQAQA QLVAAHHGGM PPAGAQIPSQ  120
NFALSLSSSS SNPPPRRQLG GGGATGPYGP FTGYAAVLGR SRFLGPAQKL LEEICDVGSA  180
RPAHQADRAA GSADDGLLDM DAMDDVAHEM DSGDREAVTV SGAEQQWRKT RLISLMEEVC  240
KRYKQYYQQL QAVISSFETV AGLSNAAPFA SIALRTMSKH FKYLKGMIQS QLRNTSKQVA  300
VAGKDGLGKE DMANFGLMGG GASAGAALMR GSNVNAFGQQ PHNIWRPQRG LPERAVSVLR  360
AWLFEHFLHP YPTDSDKQML AKQTGLTRNQ VSNWFINARV RLWKPMVEEI HNLEMRQGHK  420
NSSVDKNHLG MQQTQHSPDS SGRPSDPSNS QQGQSSSMTR NHSAHGSRHI QNELSPMTHD  480
MPGQDNRTYI AEPLPAALPL NLAHRFGLED VSDAYVMGSF GSQDRHFTKE IGGHLLHDFV  540
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-17351409563Homeobox protein Meis2
3k2a_B7e-17351409563Homeobox protein Meis2
4xrs_A6e-17351408158Homeobox protein Meis1
4xrs_B6e-17351408158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g23530.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568329.20.0BEL1-like homeodomain protein 9
SwissprotQ9LZM84e-76BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0Q3IZY20.0A0A0Q3IZY2_BRADI; Uncharacterized protein
STRINGBRADI2G23530.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-65TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]