PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g24120.3.p
Common NameBRADI_2g24120, LOC100836332
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 248aa    MW: 26358.3 Da    PI: 6.1369
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g24120.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.76e-14165217355
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                       + +r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+e  +L  e ee +++
  Bradi2g24120.3.p 165 ATQRQKRMIKNRESAARSRERKQAYIAELEAQVTQLEEEHAELLREQEEQNEK 217
                       679*************************************9988776655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-10162228IPR004827Basic-leucine zipper domain
PfamPF001704.9E-12165224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944165229IPR004827Basic-leucine zipper domain
CDDcd147072.15E-18167214No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-13168224No hitNo description
SuperFamilySSF579595.55E-11168215No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASSRVMAAS SQPPRSGSSD LARFRSASGI GSMNMDDILR NIYGETPPAG AGGASGEPSP  60
APEAAARRTA EEVWKEISAT GGLSAPVPAP APAGAGGGDG GGASVMTLED FLAREEDARV  120
TAVEGNMEVG FPDGAEGVVG GRRRGGGGGG RGRKRAPMDP MDRAATQRQK RMIKNRESAA  180
RSRERKQAYI AELEAQVTQL EEEHAELLRE QEEQNEKRLN ELKEQAFQVV IRKKPSQDLR  240
RTNSMEW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147GGRRRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00648PBMTransfer from LOC_Os05g36160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g24120.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243730.0KT224373.1 Triticum aestivum cultivar RAC875 bZIP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568373.11e-175bZIP transcription factor 12
SwissprotQ0JHF17e-67BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A0Q3G4201e-174A0A0Q3G420_BRADI; Uncharacterized protein
STRINGBRADI2G24120.31e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Representative plantOGRP9845410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-17bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]