PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g25050.1.p

Common Name

BRADI_2g25050, LOC100831629

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ERF

Protein Properties

Length: 180aa MW: 19108.3 Da PI: 9.9449

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g25050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	6.7e-16	16	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+Wv+eIr+p + r r +lg++ tae Aa a++aa + l++ Bradi2g25050.1.p 16 RYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVRLLRK 65 7***777.******943...5*******************988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.1E-24	16	78	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-8	16	59	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-23	16	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.363	16	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.49E-16	16	68	IPR016177	DNA-binding domain
PRINTS	PR00367	1.0E-8	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-8	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDRRAACGDG GEDGRRYKGV RRRRWGKWVS EIRVPGTRER LWLGSYATAE AAAVAHDAAV 60 RLLRKGDPPG AGGLINFPGR GFGQRQQQQQ LSPRSVQRVA SDAGMAADAR LVERRERDVV 120 SASAPPGLQE AAASAGIGRE QGAAYVNWRS SSGSGGGGDT GEQLVYGELS VDDMEILML*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g25050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC124836	3e-60	AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBank	AC137623	3e-60	AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBank	AP014961	3e-60	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	3e-60	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566226.1	1e-123	ethylene-responsive transcription factor ERF019
Swissprot	O80542	4e-31	ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBL	I1HJB2	1e-122	I1HJB2_BRADI; Uncharacterized protein
STRING	BRADI2G25050.1	1e-123	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6433	29	51

Link Out ? help Back to Top
Phytozome	Bradi2g25050.1.p
Entrez Gene	100831629

Publications ? help Back to Top
Scarpeci TE,Frea VS,Zanor MI,Valle EM Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis. J. Exp. Bot., 2017. 68(3): p. 673-685 [PMID:28204526]